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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_162743_162862_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162743 - 162862
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGTAC
U12 Branch Point Sequence:
TTGTGCCTACAG
Flanking Amino Acid:
QPRAWHPAGTRFLATGCPRD
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.4
37.7
Major BPS
48.6
-0
1.5
49.1
46
Major PPT
76.6
0.6
0.9
68.9
37.2
Minor 5ss
32.8
-2
3
42
44.5
Minor BPS
42
-0.7
2.3
53.03
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012529
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042305
161329 - 167221
5893
ENSAPLT00000028694
161326 - 167221
5896
ENSAPLT00000013044
161329 - 167221
5893