Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_164049_164136_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

164049 - 164136

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TGTTGCCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAT

U12 Branch Point Sequence:

AGGACGCTGATG

Flanking Amino Acid:

HARQDALARHREGDSDAPWL

Intron Amino Acid Position:

394

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

75.7

34.4

Major BPS

63.8

0.34

1.2

54.7

43.1

Major PPT

77.6

0.62

0.9

70.4

36.3

Minor 5ss

27.6

-2.6

34.8

41.6

Minor BPS

38.1

-1

2.2

38.73

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012529

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013044

161329 - 167221

5893

ENSAPLT00000042305

161329 - 167221

5893

ENSAPLT00000028694

161326 - 167221

5896