Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_164288_164369_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

164288 - 164369

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAGGGGAC

5'SS Class:

major

3'SS Sequence:

CATGCCCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGACAT

U12 Branch Point Sequence:

GTGACATCAGCC

Flanking Amino Acid:

VPSNATCSVLEVTAGSTGVV

Intron Amino Acid Position:

344

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.47

1.1

58.3

41.3

Major BPS

49.9

-0

1.4

60.7

45.9

Major PPT

73.8

0.53

0.9

65.9

35.5

Minor 5ss

27.7

-2.6

3.7

31.3

43.3

Minor BPS

43.7

-0.5

54.01

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012529

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042305

161329 - 167221

5893

ENSAPLT00000028694

161326 - 167221

5896

ENSAPLT00000013044

161329 - 167221

5893