Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_164542_165053_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

164542 - 165053

Intron Length:

512

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGGGTG

5'SS Class:

major

3'SS Sequence:

GCCCCCAAACCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CACCTAT

U12 Branch Point Sequence:

GGCCCCCAAACC

Flanking Amino Acid:

AHNGIIRGYQVWCLGEGWLH

Intron Amino Acid Position:

287

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.2

0.45

1.2

61.6

42.8

Major BPS

49.4

-0

1.2

48.1

37.3

Major PPT

53.3

0.08

44.5

35.3

Minor 5ss

35.3

-1.7

3.5

46.7

48.8

Minor BPS

45.7

-0.3

54.49

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012529

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042305

161329 - 167221

5893

ENSAPLT00000028694

161326 - 167221

5896

ENSAPLT00000013044

161329 - 167221

5893