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Intron Name: Anas_platyrhynchos_platyrhynchos_25_1688886_1718301_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1688886 - 1718301

Intron Length:

29416

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGGCGG

5'SS Class:

major

3'SS Sequence:

TTTTCCCTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTCAA

U12 Branch Point Sequence:

TCGCCCTTATCC

Flanking Amino Acid:

VRPKPLHSCAGSPSLRAYPL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

55.2

Major BPS

65.6

0.39

0.9

67.3

29.6

Major PPT

79.7

0.67

0.9

73.9

36.8

Minor 5ss

29.7

-2.3

3.2

30.3

42.8

Minor BPS

61.8

0.35

1.7

67.63

43.9

Associated Gene:

Gene:

BARX2

Ensembl Gene ID:

ENSAPLG00000023705

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017777

1688699 - 1724242

35544