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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1737178_1737250_F

Intron Information:

Intron Rank:
133077
Intron Class:
major
Intron Phase:
Intron Coordinates:
1737178 - 1737250
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTAACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTATTTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.5
0.6
1
71.4
42.9
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
73
0.7
1.2
74.26
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021556
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022792
1736308 - 1737294
987