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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1747344_1750491_F

Intron Information:

Intron Rank:
126363
Intron Class:
major
Intron Phase:
Intron Coordinates:
1747344 - 1750491
Intron Length:
3148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAGG
5'SS Class:
strong_major
3'SS Sequence:
TCCATCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTTTCCTCCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.1
41.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.2
0.66
0.8
72.8
31.8
Minor 5ss
34.5
-1.8
2.8
42.5
44.3
Minor BPS
55.7
0.16
2
70.19
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018080
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043652
1746979 - 1761557
14579