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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_177473_178385_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
177473 - 178385
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
KQQLQKSCEAAEKETCLAMQ
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
82.1
37.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
70.6
0.46
1
66
40.8
Minor 5ss
45.8
-0.4
2.9
67.6
43.1
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012363
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033482
174843 - 192283
17441
ENSAPLT00000020731
174843 - 192283
17441
ENSAPLT00000012879
174843 - 192283
17441