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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_178575_179419_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178575 - 179419
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTACGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTGTCCTTATGT
Flanking Amino Acid:
SDPFQQQATKLSKTMRQVRR
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
70.5
41.4
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
69.4
0.44
1
65.8
34.6
Minor 5ss
35.8
-1.6
2.6
42
44.7
Minor BPS
65.5
0.56
1.9
83.61
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012363
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033482
174843 - 192283
17441
ENSAPLT00000020731
174843 - 192283
17441
ENSAPLT00000012879
174843 - 192283
17441