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Intron Name: Anas_platyrhynchos_platyrhynchos_25_1788876_1789158_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

1788876 - 1789158

Intron Length:

283

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCTGCAGG

5'SS Class:

major

3'SS Sequence:

CTTTGCCTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATGAC

U12 Branch Point Sequence:

ATTTGTGTAATG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.35

1.3

56.2

48.1

Major BPS

0.42

1.1

57.7

Major PPT

80.3

0.68

0.8

77.7

31.1

Minor 5ss

40.3

-1.1

2.6

49.3

46.6

Minor BPS

47.3

-0.3

2.4

60.82

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003967

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004069

1788873 - 1793242

4370