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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1789067_1789158_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1789067 - 1789158
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAAGGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
ATTTGTGTAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
70.2
36.9
Major BPS
67
0.42
1.1
57.7
39
Major PPT
80.3
0.68
0.8
77.7
31.1
Minor 5ss
17.6
-3.7
4
29
43.5
Minor BPS
47.3
-0.3
2.4
60.82
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003967
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017768
1789039 - 1793242
4204