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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1789361_1789726_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1789361 - 1789726
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATCAT
U12 Branch Point Sequence:
TGTGTCTGAGCA
Flanking Amino Acid:
GAVKIVFALIGMLAEQFVPD
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
68.1
0.45
1.1
69.7
35.6
Major PPT
66.8
0.38
1.1
62.8
43
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
49.7
-0
1.8
64.68
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003967
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017768
1789039 - 1793242
4204
ENSAPLT00000004069
1788873 - 1793242
4370
ENSAPLT00000045822
1782915 - 1792659
9745
ENSAPLT00000035321
1781833 - 1793242
11410