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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1789940_1790803_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1789940 - 1790803
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGTAGC
5'SS Class:
major
3'SS Sequence:
CGTATTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
GCTGCTCTAAGG
Flanking Amino Acid:
LMLSVAVFVEGCLFYYHVLH
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.3
67.8
40
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
72.4
0.51
1.1
68.7
41.9
Minor 5ss
30.1
-2.3
2.8
37.2
40.1
Minor BPS
44.2
-0.5
2
47.99
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003967
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004069
1788873 - 1793242
4370
ENSAPLT00000045822
1782915 - 1792659
9745
ENSAPLT00000035321
1781833 - 1793242
11410
ENSAPLT00000017768
1789039 - 1793242
4204