About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1790989_1791852_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1790989 - 1791852
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TGGTAATGAACT
Flanking Amino Acid:
TIIQGTWFWQIGVVLFQPWG
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.2
81.4
33.4
Major BPS
67.7
0.44
1
58
38.9
Major PPT
72.9
0.51
0.8
66.7
34.6
Minor 5ss
38.3
-1.3
2.8
51.3
45.1
Minor BPS
50.4
0.09
1.9
72.52
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003967
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045822
1782915 - 1792659
9745
ENSAPLT00000035321
1781833 - 1793242
11410
ENSAPLT00000017768
1789039 - 1793242
4204
ENSAPLT00000004069
1788873 - 1793242
4370