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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1802342_1802567_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1802342 - 1802567
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTGGG
5'SS Class:
major
3'SS Sequence:
TCTCTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGCAC
U12 Branch Point Sequence:
AGCACCTGAGCT
Flanking Amino Acid:
VLAANAAASRCCNESCQLKF
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
59.9
44.9
Major BPS
48.2
-0.1
1.4
57.7
39
Major PPT
83.2
0.75
0.7
77.4
24.6
Minor 5ss
31.2
-2.2
3.3
37.4
42.4
Minor BPS
49.3
0.02
1.8
65.39
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004228
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004328
1800039 - 1802694
2656