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Intron Name: Anas_platyrhynchos_platyrhynchos_25_1819258_1820049_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1819258 - 1820049

Intron Length:

792

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

GGTCTTTCTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAACCAT

U12 Branch Point Sequence:

TGAGCAGTAACC

Flanking Amino Acid:

YGTISHGIVEVDPMLTPEER

Intron Amino Acid Position:

699

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

80.3

26.9

Major BPS

57.8

0.19

1.3

67.1

39.2

Major PPT

67.7

0.4

1.1

67.1

38.4

Minor 5ss

28.3

-2.5

2.8

33.7

41.9

Minor BPS

46.4

-0.2

2.3

61.26

43.5

Associated Gene:

Gene:

APLP2

Ensembl Gene ID:

ENSAPLG00000004239

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023111

1818384 - 1881416

63033

ENSAPLT00000020751

1819156 - 1851441

32286

ENSAPLT00000039782

1818511 - 1842889

24379

ENSAPLT00000020125

1818384 - 1881416

63033

ENSAPLT00000036373

1818384 - 1881552

63169

ENSAPLT00000004414

1819156 - 1854542

35387

ENSAPLT00000030029

1819156 - 1888976

69821