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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1820206_1820656_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1820206 - 1820656
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATCAC
U12 Branch Point Sequence:
TCCTCCTCTACC
Flanking Amino Acid:
ERVGGLVDEPDNDNSLRDDF
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
83.9
34.2
Major BPS
56.9
0.17
1.1
59.7
36.1
Major PPT
88.7
0.87
0.7
81
31
Minor 5ss
48.2
-0.2
2.5
69.3
41.2
Minor BPS
56
0.17
1.9
66.93
44.7

Associated Gene:

Gene:
APLP2
Ensembl Gene ID:
ENSAPLG00000004239
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020751
1819156 - 1851441
32286
ENSAPLT00000039782
1818511 - 1842889
24379
ENSAPLT00000020125
1818384 - 1881416
63033
ENSAPLT00000036373
1818384 - 1881552
63169
ENSAPLT00000004414
1819156 - 1854542
35387
ENSAPLT00000030029
1819156 - 1888976
69821
ENSAPLT00000023111
1818384 - 1881416
63033