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Intron Name: Anas_platyrhynchos_platyrhynchos_25_1824980_1825535_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1824980 - 1825535

Intron Length:

556

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TGATTCTTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

TTTCCTCTGATT

Flanking Amino Acid:

YVAEEIQDEIDELLQEQRAD

Intron Amino Acid Position:

525

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.8

81.4

30.6

Major BPS

0.72

38.9

Major PPT

77.8

0.63

0.9

70.2

41.1

Minor 5ss

37.4

-1.4

3.3

49.4

41.4

Minor BPS

60.2

0.4

1.6

81.27

34.1

Associated Gene:

Gene:

APLP2

Ensembl Gene ID:

ENSAPLG00000004239

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004414

1819156 - 1854542

35387

ENSAPLT00000030029

1819156 - 1888976

69821

ENSAPLT00000023111

1818384 - 1881416

63033

ENSAPLT00000020751

1819156 - 1851441

32286

ENSAPLT00000039782

1818511 - 1842889

24379

ENSAPLT00000020125

1818384 - 1881416

63033

ENSAPLT00000036373

1818384 - 1881552

63169