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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1828260_1828640_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1828260 - 1828640
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTAAATCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
CTTCCCTAAATC
Flanking Amino Acid:
LAALQADPPRPHRILQALKR
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
34.5
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
70
0.45
1
61.8
39.4
Minor 5ss
35.6
-1.6
2.8
36.8
40.4
Minor BPS
62.9
0.39
1.7
71.44
40.3

Associated Gene:

Gene:
APLP2
Ensembl Gene ID:
ENSAPLG00000004239
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020751
1819156 - 1851441
32286
ENSAPLT00000039782
1818511 - 1842889
24379
ENSAPLT00000020125
1818384 - 1881416
63033
ENSAPLT00000036373
1818384 - 1881552
63169
ENSAPLT00000004414
1819156 - 1854542
35387
ENSAPLT00000030029
1819156 - 1888976
69821
ENSAPLT00000023111
1818384 - 1881416
63033