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Intron Name: Anas_platyrhynchos_platyrhynchos_25_1828800_1829961_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1828800 - 1829961

Intron Length:

1162

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGTT

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTATTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

TGTTCCCTATTC

Flanking Amino Acid:

PKAERQTLIQHFQAMVKSLE

Intron Amino Acid Position:

396

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

78.9

35.3

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

81.6

0.71

0.8

73.5

35.7

Minor 5ss

-1.7

3.8

55.2

Minor BPS

56.9

0.19

1.9

72.02

39.1

Associated Gene:

Gene:

APLP2

Ensembl Gene ID:

ENSAPLG00000004239

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020751

1819156 - 1851441

32286

ENSAPLT00000039782

1818511 - 1842889

24379

ENSAPLT00000020125

1818384 - 1881416

63033

ENSAPLT00000036373

1818384 - 1881552

63169

ENSAPLT00000004414

1819156 - 1854542

35387

ENSAPLT00000030029

1819156 - 1888976

69821

ENSAPLT00000023111

1818384 - 1881416

63033