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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1830378_1834253_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1830378 - 1834253
Intron Length:
3876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTACCCGTACCC
Flanking Amino Acid:
SEKEVSSDMKLPTDDVDVYF
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
74.4
36.1
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
85.1
0.79
0.7
79.7
25.6
Minor 5ss
36.9
-1.5
3
49.2
40.2
Minor BPS
49.5
-0
2.3
68.7
42.5

Associated Gene:

Gene:
APLP2
Ensembl Gene ID:
ENSAPLG00000004239
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020125
1818384 - 1881416
63033