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Intron Name: Anas_platyrhynchos_platyrhynchos_25_1832586_1834253_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1832586 - 1834253

Intron Length:

1668

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

CGTCTCCACACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

TGCTCCTCACTA

Flanking Amino Acid:

SEKEVSSDMKSVCSQEAMTG

Intron Amino Acid Position:

276

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

74.4

36.1

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

67.9

0.4

0.9

61.3

34.1

Minor 5ss

36.9

-1.5

49.2

40.2

Minor BPS

52.4

0.07

1.9

64.09

42.7

Associated Gene:

Gene:

APLP2

Ensembl Gene ID:

ENSAPLG00000004239

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023111

1818384 - 1881416

63033

ENSAPLT00000020751

1819156 - 1851441

32286

ENSAPLT00000039782

1818511 - 1842889

24379

ENSAPLT00000004414

1819156 - 1854542

35387

ENSAPLT00000036373

1818384 - 1881552

63169

ENSAPLT00000030029

1819156 - 1888976

69821