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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1834472_1835019_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1834472 - 1835019
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTATCCCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
ATTAGCTTAACT
Flanking Amino Acid:
DEDEDYDVYKSEFPTEAGVE
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
79.1
30.7
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
78.5
0.64
0.9
74.5
36.3
Minor 5ss
35.8
-1.6
3.4
49.2
47.3
Minor BPS
70.9
0.74
1.8
87.4
37.8

Associated Gene:

Gene:
APLP2
Ensembl Gene ID:
ENSAPLG00000004239
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023111
1818384 - 1881416
63033
ENSAPLT00000020751
1819156 - 1851441
32286
ENSAPLT00000039782
1818511 - 1842889
24379
ENSAPLT00000020125
1818384 - 1881416
63033
ENSAPLT00000036373
1818384 - 1881552
63169
ENSAPLT00000004414
1819156 - 1854542
35387
ENSAPLT00000030029
1819156 - 1888976
69821