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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1841789_1854527_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1841789 - 1854527
Intron Length:
12739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCGTGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AAAGCAATAAAT
Flanking Amino Acid:
MARKMALAANAGTGF
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
77.4
0.62
0.9
71.4
38.4
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
44.4
-0.3
2
60.7
41.7

Associated Gene:

Gene:
APLP2
Ensembl Gene ID:
ENSAPLG00000004239
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004414
1819156 - 1854542
35387