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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_185954_187888_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
185954 - 187888
Intron Length:
1935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCTG
5'SS Class:
major
3'SS Sequence:
TTCATTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCCTTCTTAAAG
Flanking Amino Acid:
GIDQEETKKQRQNEYLRCKR
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
66.5
44.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
82.6
0.73
0.8
76.7
32
Minor 5ss
40.3
-1.1
2.7
50.3
46
Minor BPS
64.8
0.33
1.5
63.72
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012363
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020731
174843 - 192283
17441
ENSAPLT00000012879
174843 - 192283
17441
ENSAPLT00000033482
174843 - 192283
17441