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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_18732_20617_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18732 - 20617
Intron Length:
1886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTAGTTCA
5'SS Class:
major
3'SS Sequence:
TATGTTATTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TCTTCCTTATGT
Flanking Amino Acid:
DQEELRRSKKLDSVIHACVS
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
71.8
33.9
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
75.4
0.57
0.9
67.3
43.4
Minor 5ss
39.3
-1.2
2.7
48.2
40.5
Minor BPS
66
0.58
1.9
83.49
43.8

Associated Gene:

Gene:
ANKMY1
Ensembl Gene ID:
ENSAPLG00000013399
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013963
6941 - 53344
46404