Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1895967_1896214_F

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

5UTR

Intron Coordinates:

1895967 - 1896214

Intron Length:

248

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATCCTTC

5'SS Class:

weak_minor

3'SS Sequence:

CCTTTCTTTATAG|C

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

CTTGCTTTAATG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.3

0.45

1.2

65.8

41.1

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

84.4

0.77

0.7

79.7

25.9

Minor 5ss

1.18

1.3

85.1

32.4

Minor BPS

66.2

0.37

1.5

66.31

42.6

Associated Gene:

Gene:

PRDM10

Ensembl Gene ID:

ENSAPLG00000004858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026222

1895854 - 1931625

35772

ENSAPLT00000037893

1895854 - 1931625

35772