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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1896405_1898253_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1896405 - 1898253
Intron Length:
1849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTAGT
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCAGAA
U12 Branch Point Sequence:
AGTACAGGATCT
Flanking Amino Acid:
SAEQEQNTAQVHFVPEGGAV
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
77.8
38.7
Major BPS
49.9
-0
1.1
46.7
38.9
Major PPT
90.8
0.92
0.7
88.9
28.1
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
38.2
-0.8
2.3
58.53
43.6

Associated Gene:

Gene:
PRDM10
Ensembl Gene ID:
ENSAPLG00000004858
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026222
1895854 - 1931625
35772
ENSAPLT00000023249
1896215 - 1931625
35411
ENSAPLT00000020075
1886627 - 1931625
44999
ENSAPLT00000037893
1895854 - 1931625
35772
ENSAPLT00000005057
1896215 - 1931625
35411
ENSAPLT00000033618
1896215 - 1931625
35411