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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1900141_1902955_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1900141 - 1902955
Intron Length:
2815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTATAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
GTGCCTATAATT
Flanking Amino Acid:
YVQQDATTQQVTVLLPAAAQ
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
70.5
0.46
0.9
67
38.1
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
55.6
0.26
1.6
71.1
40

Associated Gene:

Gene:
PRDM10
Ensembl Gene ID:
ENSAPLG00000004858
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020075
1886627 - 1931625
44999
ENSAPLT00000005057
1896215 - 1931625
35411
ENSAPLT00000037893
1895854 - 1931625
35772
ENSAPLT00000033618
1896215 - 1931625
35411
ENSAPLT00000023249
1896215 - 1931625
35411