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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1904313_1904680_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1904313 - 1904680
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGCATG
5'SS Class:
major
3'SS Sequence:
TCTTGTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
TCCACCTGACAA
Flanking Amino Acid:
PPRPFDPNDLWCEECNNAHP
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.2
65.7
45.7
Major BPS
60.1
0.25
1
51
35.6
Major PPT
81.8
0.72
0.9
75.5
38.3
Minor 5ss
45
-0.5
2.9
58.6
45.6
Minor BPS
45.7
-0.3
1.9
54.07
44.1

Associated Gene:

Gene:
PRDM10
Ensembl Gene ID:
ENSAPLG00000004858
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026222
1895854 - 1931625
35772
ENSAPLT00000023249
1896215 - 1931625
35411
ENSAPLT00000020075
1886627 - 1931625
44999
ENSAPLT00000037893
1895854 - 1931625
35772
ENSAPLT00000005057
1896215 - 1931625
35411
ENSAPLT00000033618
1896215 - 1931625
35411