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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1904923_1908248_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1904923 - 1908248
Intron Length:
3326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAG
U12 Branch Point Sequence:
ATTACGTTACCT
Flanking Amino Acid:
ELKDCYIHLKVWYAASYAEF
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
61.8
0.29
1.5
69.7
35.5
Major PPT
78.6
0.64
0.8
72.8
32
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
52.8
0.17
2.3
79.06
42.9

Associated Gene:

Gene:
PRDM10
Ensembl Gene ID:
ENSAPLG00000004858
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033618
1896215 - 1931625
35411