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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1906190_1908248_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1906190 - 1908248
Intron Length:
2059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAG
U12 Branch Point Sequence:
ATTACGTTACCT
Flanking Amino Acid:
KNVEPKQELKVWYAASYAEF
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
40.1
Major BPS
61.8
0.29
1.5
69.7
35.5
Major PPT
78.6
0.64
0.8
72.8
32
Minor 5ss
38.5
-1.3
3.4
55.3
48.9
Minor BPS
52.8
0.17
2.3
79.06
42.9

Associated Gene:

Gene:
PRDM10
Ensembl Gene ID:
ENSAPLG00000004858
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023249
1896215 - 1931625
35411
ENSAPLT00000020075
1886627 - 1931625
44999
ENSAPLT00000005057
1896215 - 1931625
35411
ENSAPLT00000037893
1895854 - 1931625
35772
ENSAPLT00000026222
1895854 - 1931625
35772