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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1908322_1908796_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1908322 - 1908796
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATAAGC
5'SS Class:
major
3'SS Sequence:
CAATGGAACATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTTACTGACAT
Flanking Amino Acid:
IHDISEEERKVLREQEKNWP
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
62.7
42.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
49.1
-0
1
39.7
37.7
Minor 5ss
33.5
-1.9
2.9
35.8
40.7
Minor BPS
48.4
-0
2
72.48
43.4

Associated Gene:

Gene:
PRDM10
Ensembl Gene ID:
ENSAPLG00000004858
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026222
1895854 - 1931625
35772
ENSAPLT00000023249
1896215 - 1931625
35411
ENSAPLT00000020075
1886627 - 1931625
44999
ENSAPLT00000037893
1895854 - 1931625
35772
ENSAPLT00000005057
1896215 - 1931625
35411
ENSAPLT00000033618
1896215 - 1931625
35411