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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1909995_1912159_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1909995 - 1912159
Intron Length:
2165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTG
5'SS Class:
major
3'SS Sequence:
TTTGCGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
GGTTGTATGATT
Flanking Amino Acid:
NGEKCEEGTQDLLHFSSKGQ
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.8
37.5
Major BPS
70.5
0.51
1
72
33.1
Major PPT
78.2
0.63
0.9
74.2
40.2
Minor 5ss
49.3
-0
2.5
66.4
45.1
Minor BPS
46.2
-0.2
2
65.11
39.8

Associated Gene:

Gene:
PRDM10
Ensembl Gene ID:
ENSAPLG00000004858
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026222
1895854 - 1931625
35772
ENSAPLT00000023249
1896215 - 1931625
35411
ENSAPLT00000020075
1886627 - 1931625
44999
ENSAPLT00000037893
1895854 - 1931625
35772
ENSAPLT00000005057
1896215 - 1931625
35411
ENSAPLT00000033618
1896215 - 1931625
35411