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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1912388_1916946_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1912388 - 1916946
Intron Length:
4559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
CTGTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TAATACTAAACA
Flanking Amino Acid:
DDMRRAKRIRNAALQHLFIR
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.9
43.8
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
86.6
0.82
0.8
84.6
30.3
Minor 5ss
38.3
-1.3
2.8
40.4
45.5
Minor BPS
59.3
0.29
1.9
70.83
40.7

Associated Gene:

Gene:
PRDM10
Ensembl Gene ID:
ENSAPLG00000004858
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020075
1886627 - 1931625
44999
ENSAPLT00000037893
1895854 - 1931625
35772
ENSAPLT00000005057
1896215 - 1931625
35411
ENSAPLT00000033618
1896215 - 1931625
35411
ENSAPLT00000026222
1895854 - 1931625
35772
ENSAPLT00000023249
1896215 - 1931625
35411