Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_192035_192143_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

192035 - 192143

Intron Length:

109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGC|GTAAGTAGG

5'SS Class:

major

3'SS Sequence:

TCCCTTGGTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAG

U12 Branch Point Sequence:

GTTTAAGTCACG

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.4

0.43

1.4

63.6

48.1

Major BPS

57.9

0.2

1.7

69.7

44.2

Major PPT

72.6

0.51

67.8

37.6

Minor 5ss

36.1

-1.6

2.7

39.9

Minor BPS

39.8

-0.9

2.6

54.32

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012363

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012879

174843 - 192283

17441