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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1920474_1921227_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1920474 - 1921227
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CTTTCTCCTAAG
Flanking Amino Acid:
MMGFRRRGMLVNHLSKRHPD
Intron Amino Acid Position:
776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
74.4
0.55
1
79.4
26.6
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
40.4
-0.9
2.2
49.47
44.1

Associated Gene:

Gene:
PRDM10
Ensembl Gene ID:
ENSAPLG00000004858
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026222
1895854 - 1931625
35772
ENSAPLT00000020075
1886627 - 1931625
44999
ENSAPLT00000005057
1896215 - 1931625
35411
ENSAPLT00000037893
1895854 - 1931625
35772
ENSAPLT00000033618
1896215 - 1931625
35411