Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1924563_1925792_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1924563 - 1925792

Intron Length:

1230

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCTGTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TCTGCTTTGATT

Flanking Amino Acid:

IQLQVVQVAQATSPHQSQHS

Intron Amino Acid Position:

985

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.1

1.02

0.7

86.6

22.3

Major BPS

0.85

0.9

39.9

Major PPT

77.1

0.61

0.9

70.5

40.6

Minor 5ss

30.6

-2.2

2.6

35.8

41.1

Minor BPS

66.6

0.6

1.3

78.01

39.5

Associated Gene:

Gene:

PRDM10

Ensembl Gene ID:

ENSAPLG00000004858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020075

1886627 - 1931625

44999

ENSAPLT00000037893

1895854 - 1931625

35772

ENSAPLT00000005057

1896215 - 1931625

35411

ENSAPLT00000033618

1896215 - 1931625

35411

ENSAPLT00000026222

1895854 - 1931625

35772

ENSAPLT00000023249

1896215 - 1931625

35411