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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1925934_1926774_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1925934 - 1926774
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
GAACACTTACCT
Flanking Amino Acid:
PSSATQPSSQVGGQPLSPSS
Intron Amino Acid Position:
1032

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.9
38.5
Major BPS
61.4
0.28
1
53
33.7
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
40.7
-1
2.8
52.9
44.2
Minor BPS
49.6
0.05
1.8
66.03
43.4

Associated Gene:

Gene:
PRDM10
Ensembl Gene ID:
ENSAPLG00000004858
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026222
1895854 - 1931625
35772
ENSAPLT00000023249
1896215 - 1931625
35411
ENSAPLT00000020075
1886627 - 1931625
44999
ENSAPLT00000037893
1895854 - 1931625
35772
ENSAPLT00000005057
1896215 - 1931625
35411
ENSAPLT00000033618
1896215 - 1931625
35411