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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1939167_1939842_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1939167 - 1939842
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CTTTCATTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
SPIPLSSVKEEPLEEMKPCL
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
75
0.56
1
75.7
32
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
NFRKB
Ensembl Gene ID:
ENSAPLG00000005222
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023580
1938428 - 1952516
14089
ENSAPLT00000005419
1933100 - 1951623
18524
ENSAPLT00000042598
1933100 - 1951623
18524
ENSAPLT00000027822
1938428 - 1951623
13196