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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1942388_1942474_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1942388 - 1942474
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCCAA
U12 Branch Point Sequence:
TTTTTTTTGATA
Flanking Amino Acid:
LETKDQTFFKENEDSSDATT
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.7
39.3
Major BPS
60.3
0.26
1.2
70.7
35.5
Major PPT
84.9
0.78
0.8
84.2
30.9
Minor 5ss
29.8
-2.3
2.8
32.5
35.8
Minor BPS
74.5
0.76
1
81.02
27.4

Associated Gene:

Gene:
NFRKB
Ensembl Gene ID:
ENSAPLG00000005222
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042598
1933100 - 1951623
18524
ENSAPLT00000027822
1938428 - 1951623
13196
ENSAPLT00000023580
1938428 - 1952516
14089
ENSAPLT00000005419
1933100 - 1951623
18524