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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1943034_1943908_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1943034 - 1943908
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTAAAAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TCTTGTTTAAAA
Flanking Amino Acid:
GEEKRVFQEQERYRYSQPHK
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
63.3
0.3
1.1
55.9
42.5
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
60.6
0.33
1.9
71.99
40.5

Associated Gene:

Gene:
NFRKB
Ensembl Gene ID:
ENSAPLG00000005222
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023580
1938428 - 1952516
14089
ENSAPLT00000005419
1933100 - 1951623
18524
ENSAPLT00000042598
1933100 - 1951623
18524
ENSAPLT00000027822
1938428 - 1951623
13196