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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1944084_1944681_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1944084 - 1944681
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCGA
5'SS Class:
major
3'SS Sequence:
TTTTCTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GATTTTCTATTT
Flanking Amino Acid:
RPAYVTILSLVRDAAARLPN
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.3
43.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
91.1
0.92
0.7
89.6
25.2
Minor 5ss
30.3
-2.3
3.2
35.6
43
Minor BPS
47.5
-0.1
1.8
65.91
39.1

Associated Gene:

Gene:
NFRKB
Ensembl Gene ID:
ENSAPLG00000005222
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027822
1938428 - 1951623
13196
ENSAPLT00000023580
1938428 - 1952516
14089
ENSAPLT00000005419
1933100 - 1951623
18524
ENSAPLT00000042598
1933100 - 1951623
18524