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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1945424_1946610_F

Intron Information:

Intron Rank:
12
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
1945424 - 1946610
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATCTTCA
5'SS Class:
weak_minor
3'SS Sequence:
GGTTTCTTTGTAG|A
3'SS Class:
minor_hybrid
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AAGGCCTTCATG
Flanking Amino Acid:
KPGLVLLLGSKSSSKESSVK
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.4
0.08
1.3
54.5
39.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
79
0.65
0.9
73.7
36.9
Minor 5ss
67.6
0.59
1.8
77.1
37.9
Minor BPS
47.9
-0.3
1.9
50.39
44.2

Associated Gene:

Gene:
NFRKB
Ensembl Gene ID:
ENSAPLG00000005222
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005419
1933100 - 1951623
18524