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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1947753_1948240_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1947753 - 1948240
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTGATGTAATT
Flanking Amino Acid:
NVAGQNIIKQVAITGQLGMK
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
81.4
0.71
0.9
73.1
42.1
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
49.3
0.03
2.2
76.08
41.4

Associated Gene:

Gene:
NFRKB
Ensembl Gene ID:
ENSAPLG00000005222
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005419
1933100 - 1951623
18524
ENSAPLT00000042598
1933100 - 1951623
18524
ENSAPLT00000023580
1938428 - 1952516
14089