About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1949852_1950595_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1949852 - 1950595
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTTATTGACC
Flanking Amino Acid:
APIIKGNLGANISGLGRNII
Intron Amino Acid Position:
1006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81
0.7
0.7
80.8
24.4
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
64.9
0.45
1.6
75.48
34.5

Associated Gene:

Gene:
NFRKB
Ensembl Gene ID:
ENSAPLG00000005222
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042598
1933100 - 1951623
18524
ENSAPLT00000027822
1938428 - 1951623
13196
ENSAPLT00000023580
1938428 - 1952516
14089
ENSAPLT00000005419
1933100 - 1951623
18524