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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1950732_1951497_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1950732 - 1951497
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
CCATTTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATGAGTTGAACT
Flanking Amino Acid:
QLQQQGQATQVRIQTVPASH
Intron Amino Acid Position:
1052

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.1
35.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
66.5
0.37
1
62.3
37.5
Minor 5ss
28.9
-2.4
3.5
38.8
46.5
Minor BPS
48.8
-0
1.9
67.83
43

Associated Gene:

Gene:
NFRKB
Ensembl Gene ID:
ENSAPLG00000005222
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042598
1933100 - 1951623
18524
ENSAPLT00000027822
1938428 - 1951623
13196
ENSAPLT00000023580
1938428 - 1952516
14089
ENSAPLT00000005419
1933100 - 1951623
18524