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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_197395_197526_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
197395 - 197526
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCAGG
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAA
U12 Branch Point Sequence:
CCTCTCTCCATA
Flanking Amino Acid:
LVAYAIGMFISGIFGERLPL
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
54.7
49.5
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
73.4
0.53
0.7
68.3
25.5
Minor 5ss
43.3
-0.7
3
58
46.3
Minor BPS
44.3
-0.4
1.9
51.84
40.8

Associated Gene:

Gene:
SLC37A2
Ensembl Gene ID:
ENSAPLG00000011879
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007838
195217 - 203244
8028
ENSAPLT00000042855
195217 - 202791
7575
ENSAPLT00000024265
195217 - 202194
6978
ENSAPLT00000012386
195217 - 202791
7575