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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1979948_1980848_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1979948 - 1980848
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCATC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATCTAT
U12 Branch Point Sequence:
TAGCACTGCACT
Flanking Amino Acid:
PKDYVQINNTRYCGERSQFV
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
76.2
39.9
Major BPS
49.3
-0
1.4
50.5
44.9
Major PPT
81.4
0.71
0.8
78
30.8
Minor 5ss
42.5
-0.8
3.2
59.7
45.1
Minor BPS
45.6
-0.2
2.1
64.99
44.6

Associated Gene:

Gene:
ST14
Ensembl Gene ID:
ENSAPLG00000005480
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019724
1966424 - 1986258
19835
ENSAPLT00000005711
1966424 - 1986784
20361