Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1988533_1988692_R

Intron Information:

Intron Rank:

148635

Intron Class:

major

Intron Phase:

Intron Coordinates:

1988533 - 1988692

Intron Length:

160

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGATTA

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTTCCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCCT

U12 Branch Point Sequence:

TTTTTTTTGTTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

75.6

29.3

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

81.9

0.72

0.7

81.5

30.5

Minor 5ss

36.2

-1.6

3.2

44.1

44.7

Minor BPS

46.8

-0.1

3.4

81.5

34.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027418

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045648

1988470 - 2010759

22290